algorithms in bioinformatics

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Algorithms In Bioinformatics

Author : Wing-Kin Sung
ISBN : 1420070347
Genre : Science
File Size : 57. 75 MB
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Thoroughly Describes Biological Applications, Computational Problems, and Various Algorithmic Solutions Developed from the author’s own teaching material, Algorithms in Bioinformatics: A Practical Introduction provides an in-depth introduction to the algorithmic techniques applied in bioinformatics. For each topic, the author clearly details the biological motivation and precisely defines the corresponding computational problems. He also includes detailed examples to illustrate each algorithm and end-of-chapter exercises for students to familiarize themselves with the topics. Supplementary material is available at http://www.comp.nus.edu.sg/~ksung/algo_in_bioinfo/ This classroom-tested textbook begins with basic molecular biology concepts. It then describes ways to measure sequence similarity, presents simple applications of the suffix tree, and discusses the problem of searching sequence databases. After introducing methods for aligning multiple biological sequences and genomes, the text explores applications of the phylogenetic tree, methods for comparing phylogenetic trees, the problem of genome rearrangement, and the problem of motif finding. It also covers methods for predicting the secondary structure of RNA and for reconstructing the peptide sequence using mass spectrometry. The final chapter examines the computational problem related to population genetics.

Bioinformatics

Author : N. Gautham
ISBN : 1842653008
Genre : Science
File Size : 78. 53 MB
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"Bioinformatics: Databases and Algorithms has two features that distinguish it from others in this genre. First, it seeks to explain some of the basic algorithms in bioinformatics to readers who have little exposure to computer science and mathematics. Second, it deals with structural bioinformatics in greater depth than most other books. The emphasis of this book is on algorithms, though databases have not been entirely neglected, and they have a whole chapter to themselves. Also much attention is given to structural bioinformatics."--Jacket.

An Introduction To Bioinformatics Algorithms

Author : Neil C. Jones
ISBN : 0262101068
Genre : Computers
File Size : 84. 54 MB
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An introductory text that emphasizes the underlying algorithmic ideas that are driving advances in bioinformatics.

Bioinformatics Algorithms

Author : Phillip Compeau
ISBN : 0990374610
Genre :
File Size : 23. 10 MB
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Bioinformatics Algorithms: An Active Learning Approach is one of the first textbooks to emerge from the recent Massive Open Online Course (MOOC) revolution. A light-hearted and analogy-filled companion to the authors' series of courses on Coursera, this book presents students with a dynamic approach to learning bioinformatics. It strikes a unique balance between practical challenges in modern biology and fundamental algorithmic ideas, thus capturing the interest of biology and computer science students alike. Each chapter begins with a central biological question, such as "Are There Fragile Regions in the Human Genome?" or "Which DNA Patterns Play the Role of Molecular Clocks?" and then steadily develops the algorithmic sophistication required to answer this question. Hundreds of exercises are incorporated directly into the text as soon as they are needed; readers can test their knowledge through automated coding challenges on Rosalind (http://rosalind.info), an online platform for learning bioinformatics. The textbook website (http://bioinformaticsalgorithms.com) directs readers toward additional educational materials, including video lectures and PowerPoint slides.

Algorithms In Bioinformatics

Author : Steven L. Salzberg
ISBN : 9783642042409
Genre : Science
File Size : 49. 4 MB
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These proceedings contain papers from the 2009 Workshop on Algorithms in Bioinformatics (WABI), held at the University of Pennsylvania in Philadelphia, Pennsylvania during September 12–13, 2009. WABI 2009 was the ninth annual conference in this series, which focuses on novel algorithms that address imp- tantproblemsingenomics,molecularbiology,andevolution.Theconference- phasizes research that describes computationally e?cient algorithms and data structures that have been implemented and tested in simulations and on real data. WABI is sponsored by the European Association for Theoretical C- puter Science (EATCS) and the International Society for Computational Bi- ogy (ISCB). WABI 2009 was supported by the Penn Genome Frontiers Institute and the Penn Center for Bioinformatics at the University of Pennsylvania. For the 2009 conference, 90 full papers were submitted for review by the Program Committee, and from this strong ?eld of submissions, 34 papers were chosen for presentation at the conference and publication in the proceedings. The ?nal programcovered a wide range of topics including gene interaction n- works, molecular phylogeny, RNA and protein structure, and genome evolution.

Algorithms In Bioinformatics

Author : Keith Crandall
ISBN : 9783540873600
Genre : Computers
File Size : 49. 63 MB
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Algorithms In Bioinformatics

Author : Gary Benson
ISBN : 3540200762
Genre : Computers
File Size : 38. 82 MB
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This book constitutes the refereed proceedings of the Third International Workshop on Algorithms in Bioinformatics, WABI 2003, held in Budapest, Hungary, in September 2003. The 36 revised full papers presented were carefully reviewed and selected from 78 submissions. The papers are organized in topical sections on comparative genomics, database searching, gene finding and expression, genome mapping, pattern and motif discovery, phylogenetic analysis, polymorphism, protein structure, sequence alignment, and string algorithms.

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